High-Throughput Biology - From Sequence to Networks 2019
High-Throughput Data Analysis
| Day 1 | Day 2 | ||
|---|---|---|---|
| Monday, March 11 | Tuesday, March 12 | ||
| 7:30 | *Breakfast* | 7:30 | *Breakfast* |
| 9:00 | Welcome (Michelle) | 9:00 | Module 4: Small-Variant Calling and Annotation (Mathieu) |
| 9:30 | Module 1: Introduction to High-Throughput Sequencing (Sara Goodwin) | ||
| 10:30 | *Coffee Break* | 10:00 | *Coffee Break* |
| 11:00 | Module 2: Data Visualization (Heather Gibling) | 10:30 | Module 4 Lab |
| 11:45 | Module 2 Lab | 11:30 | Module 5: Structural Variant Calling (Mathieu Bourgey) |
| 12:30 | *Lunch* | 12:30 | *Lunch* |
| 1:30 | Module 3: Genome Alignment (Mathieu) | 1:30 | Module 5 Lab |
| 2:30 | Connecting to the Cloud (Zhibin) | 2:15 | Module 6: De Novo Assembly (Jared Simpson) |
| 3:00 | *Coffee Break* | 3:00 | *Coffee Break* |
| 3:30 | Module 3 Lab | 3:30 | Module 6 Lab |
| 5:30 | *Dinner* | 5:30 | *Dinner* |
| 7:00 | *Welcome Reception* | 7:00 | Optional: Integrated Assignment |
RNA-Seq Data Analysis
| Day 3 | Day 4 | ||
|---|---|---|---|
| Wednesday, March 13 | Thursday, March 14 | ||
| 7:30 | *Breakfast* | 7:30 | *Breakfast* |
| 9:00 | Module 7: Introduction to RNA Sequencing (Malachi Griffith) | 9:00 | Module 9: Expression and Differential Expression (Christopher Miller) |
| 10:00 | *Coffee Break* | 10:00 | *Coffee Break* |
| 10:30 | Module 7 Lab | 10:30 | Module 9 Lab |
| 12:30 | *Lunch* | 12:00 | *Lunch* |
| 1:30 | Module 8: RNA-Seq Alignment and Visualization (Christopher Miller) | 1:00 | Module 10: Reference Free Alignment (Malachi Griffith) |
| 2:00 | Module 11: Isoform Discovery and Alternative Expression (Kelsy Cotto) | ||
| 3:00 | *Coffee Break* | 3:30 | *Coffee Break* |
| 3:30 | Module 8 Lab | 4:00 | Module 11 Lab |
| 5:30 | *Dinner* | 5:30 | *Dinner* |
| 7:00 | Optional: Integrated Assignment | 7:00 | Optional: Integrated Assignment |
Pathway and Network Analysis
| Day 5 | Day 6 | Day 7 | |||
|---|---|---|---|---|---|
| Friday, March 15 | Saturday, March 16 | Sunday, March 17 | |||
| 7:30 | *Breakfast* | 7:30 | *Breakfast* | 7:30 | *Breakfast* |
| 9:00 | Module 12: Introduction to Pathway and Network Analysis (Jüri Reimand) | 9:00 | Module 15: More depth on network and pathway + Cytoscape Enrichment map (Veronique Voisin) | 9:00 | Module 17: Regulatory Network Analysis (Michael Hoffman) |
| 10:00 | *Coffee Break* | 10:00 | *Coffee Break* | 10:30 | *Coffee Break* |
| 10:30 | Module 13: Finding Over-Represented Pathways | 10:30 | Module 15 Lab: Cytoscape/Enrichment Map | 11:00 | Module 17 Lab |
| 11:30 | Module 13 Lab (Jüri Reimand) | ||||
| 12:30 | *Lunch* | 12:30 | *Lunch* | 12:30 | Survey and Closing Remarks |
| 1:30 | Module 13 Lab - Continued | 1:30 | Module 16: Gene Function Prediction (Quaid Morris) | 1:00 | Optional: Integrated Assignment to 3:00pm (Veronique Voisin) |
| 2:00 | Module 14: Network Visualization and Analysis with Cytoscape and Reactome (Robin Haw) | ||||
| 3:15 | *Coffee Break* | 3:00 | *Coffee Break* | ||
| 3:45 | Module 14 Lab: De novo subnetwork clustering analysis- Reactome | 3:30 | Module 16 Lab: geneMANIA | ||
| 5:30 | *Pizza Dinner (Hershey)* | 5:30 | *Banquet Dinner* | ||
| 7:00 | Optional: Integrated Assignment | 7:00 | *Banquet* | ||
| 9:00 | Dance Party with DJ (Bush Hall) |