Exploratory Analysis of Biological Data using R 2017

Welcome

Welcome to Exploratory Analysis of Biological Data using R.

The course schedule can be found here.

If you have questions or comments, visit the workshop Q&A forum.

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Class Photo

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Day 1

The most current version of our RStudio projects for today live at

• https://github.com/hyginn/R_EDA-Introduction
• https://github.com/hyginn/R_EDA-Regression
• https://github.com/hyginn/R_EDA-DimensionReduction

You will be able to access them there for the foreseeable future.

1. Open RStudio.
2. Select File → NewProject…
3. Click on Version Control.
4. Click on Git.
5. Enter https://github.com/hyginn/R_EDA-Introduction as the Repository URL.
6. Type a <tab> character, the Project directory name field should then autofill to read R-Intro.
7. Click on Browse… to find your project directory. (You should have created a project directory. If you didn’t, do it now). Click Open.
8. Click Create Project; the project files should be downloaded and the console should prompt you to type init() to begin.
9. Type init() into the console pane.

When you are done, place a blue postIt on the lid of your laptop. Use a red postIt if you have issues.

Welcome

Ann Meyer

Module 1: Exploratory Data Analysis

Boris Steipe

Lecture

Module 2: Regression

Lecture

Module 3: Dimension Reduction

Lecture

Integrated Assignment

Supporting Files for Assignment

Day 2

The most current version of our RStudio projects for today live at

• https://github.com/hyginn/R_EDA-Clustering
• https://github.com/hyginn/R_EDA-HypothesisTesting

Module 4: Clustering

Lecture

Module 5: Hypothesis Testing

Lecture

Annotation file

The most current version of our RStudio projects for today live at

• https://github.com/hyginn/R_EDA-Introduction
• https://github.com/hyginn/R_EDA-Regression
• https://github.com/hyginn/R_EDA-DimensionReduction

You will be able to access them there for the foreseeable future.

1. Open RStudio.
2. Select File → NewProject…
3. Click on Version Control.
4. Click on Git.
5. Enter https://github.com/hyginn/R_EDA-Introduction as the Repository URL.
6. Type a <tab> character, the Project directory name field should then autofill to read R-Intro.
7. Click on Browse… to find your project directory. (You should have created a project directory. If you didn’t, do it now). Click Open.
8. Click Create Project; the project files should be downloaded and the console should prompt you to type init() to begin.
9. Type init() into the console pane.

When you are done, place a blue postIt on the lid of your laptop. Use a red postIt if you have issues.

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