Epigenomic Analysis 2023
Welcome
Welcome to Epigenomics Analysis 2023.
The course schedule can be found here
Meet your faculty here
Pre-Workshop Materials
Pre-work including programs to install, tutorials, and readings can be found here
AWS Module
Connecting and properly using a cloud computing cluster at the CBW here
Class photo
Epigenomics Analysis Class of 2023
Day 1
Welcome
Nia Hughes
Module 1: Introduction to ChIP Sequencing and Analysis
Martin Hirst
Module 1 Lecture Slides
Module 1 Lecture Recording
Module 1 Lab
Module 2: Alignment, Peak Calling, and Visualization
Martin Hirst
Module 2 Lecture Slides
Module 2 Lecture Recording
Module 2 Lab
Day 2
Module 3: ChIP-seq Differential Analysis
Edmund Su
Module 3 Lecture Slides
Module 3 Lecture Recording
Module 3 Lab
Module 4: Whole-Genome Bisulfite Sequencing and Analysis
Guillaume Bourque
Module 4 Lecture Slides
Module 4 Lecture Recording
Module 4 Lab
Day 3
Module 5: Downstream Analysis and Online Tools
David Bujold
Module 5 Lecture Slides
Module 5 Lecture Recording
Module 5 Lab
Post-Workshop Materials
CourseData
Note that some of these files are quite large. If you have issues downloading them, contact us at support@bioinformatics.ca.
AMI
We have made our AWS AMI (Amazon Machine Image) publicly available. To launch your own instance, follow the instructions provided by Amazon on how to launch an EC2 instance from a custom Amazon Machine Image. Please note that you will need an AWS account to proceed, and that you will need to upload the CourseData files yourself.
Here are the details of the AMI:
- AWS Region: us-east-1 (N. Virgina)
- AMI type: public image
- AMI name: CBW_EPI_231005
- AMI ID: ami-0ae28d3f8e57ba8cf
If you want to create and activate a new AWS account, please follow the instructions provided by Amazon.
Software
For information on installing the necessary tools, please visit