High Throughput Genomics Analysis
Welcome
The course schedule can be found here
Meet your faculty here
Pre-Workshop Materials
Pre-work including programs to install can be found here
AWS Module
Connecting and properly using a cloud computing cluster at the CBW here ***
Class Photo
Comming soon
Day 1
Welcome
Rachade Hmamouchi
Module 1: Introduction
Jared Simpson
Lecture: Introduction to Sequencing Technologies
Lecture: Introduction to HTS file formats
Module 2: data vizualization with IGV
Rob Syme
Module 3: Genome Alignment
Mathieu Bourgey
Day 2
Module 3: Genome Alignment
Mathieu Bourgey
Module 4: Single nucleotide variant Calling
Mathieu Bourgey
Day 3
Module 5: Structural Variant Calling
Rob Syme
Module 6: Genome Assembly
Jared Simpson