Infectious Disease Genomic Epidemiology 2023

conda

Install Miniconda by following the instructoion at Miniconda official site

signalcovtools

download signalncovtools_yaml.yaml

conda env create -f ./signalncovtools_yaml.yaml -n signalcovtools

rgi

conda create --name rgi --channel conda-forge --channel bioconda --channel defaults rgi
pip install hAMRonization

module8-emerging-pathogen

download environment.yml

conda env create -f module8-emerging-pathogen.yaml -n module8-emerging-pathogen