| 8:45 |
11:45 |
Zoom opens |
8:00 |
11:00 |
Optional: Integrative Assignment Review (Hamilton TAs) |
8:00 |
11:00 |
Optional: Integrative Assignment Review (Hamilton TAs) |
8:00 |
11:00 |
Optional: Integrative Assignment Review (Hamilton TAs) |
8:00 |
11:00 |
Optional: Integrative Assignment Review (Hamilton TAs) |
| 9:00 |
12:00 |
Welcome (Nia Hughes) |
9:00 |
12:00 |
Module 3: Data Curation and Data Sharing (Emma Griffiths) |
9:00 |
12:00 |
Module 5: Viral Pathogen Genomic Analysis - Single Nucleotide Variants (Jared Simpson) |
9:00 |
12:00 |
Module 6 Lab pt.2: Bacterial Pathogen Genomic Analysis - Genome-based Subtyping (Ed Taboada) |
9:00 |
12:00 |
Module 8 Lab: Phylodynamics (Finlay Maguire) |
| 9:30 |
12:30 |
AWS review (Zhibin Lu) |
10:00 |
13:00 |
Module 3 Lab pt. 1: Data Curation and Data Sharing (Emma Griffiths) |
10:00 |
13:00 |
Module 5 Lab pt. 1: Viral Pathogen Genomic Analysis - Single Nucleotide Variants (Jared Simpson) |
10:00 |
13:00 |
Module 7: Antimicrobial Resistant Gene (AMR) Analysis (Andrew McArthur) |
10:00 |
13:00 |
Module 9: Mobile Genetic Elements (Rob Beiko) |
| 10:00 |
13:00 |
Module 1: Introduction to Genomic Epidemiology (William Hsiao) |
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| 11:00 |
14:00 |
Break (20 min) |
11:00 |
14:00 |
Break (20 min) |
11:00 |
14:00 |
Break (20 min) |
11:00 |
14:00 |
Break (20 min) |
11:00 |
14:00 |
Break (20 min) |
| 11:20 |
14:20 |
Module 2: De Novo Genome Assembly and Annotation (Gary van Domselaar) |
11:20 |
14:20 |
Module 3 Lab pt. 2: Data Curation and Data Sharing (Emma Griffiths) |
11:20 |
14:20 |
Module 5 Lab pt. 2: Viral Pathogen Genomic Analysis - Single Nucleotide Variants (Jared Simpson) |
11:20 |
14:20 |
Module 7 Lab pt. 1: Antimicrobial Resistant Gene (AMR) Analysis (Andrew McArthur) |
11:20 |
14:20 |
Module 9 Lab: Mobile Genetic Elements (Rob Beiko) |
| 12:20 |
15:20 |
Break (50 min) |
12:20 |
15:20 |
Break (50 min) |
12:20 |
15:20 |
Break (50 min) |
12:20 |
15:20 |
Break (50 min) |
12:20 |
15:20 |
Break (50 min) |
| 13:10 |
16:10 |
Module 2: De Novo Genome Assembly and Annotation (Gary van Domselaar) |
13:10 |
16:10 |
Module 4: Phylogenetic Analysis (Fiona Brinkman) - lecture |
13:10 |
16:10 |
Module 6: Bacterial Pathogen Genomic Analysis - Genome-based Subtyping (Ed Taboada) |
13:10 |
16:10 |
Module 7 Lab pt. 2: Antimicrobial Resistant Gene (AMR) Analysis (Andrew McArthur) |
13:10 |
16:10 |
Module 10: Emerging Pathogen Detection and Identification (Gary van Domselaar) |
| 14:40 |
17:40 |
Break (20 min) |
14:10 |
17:10 |
Break (20 min) |
14:10 |
17:10 |
Break (20 min) |
14:10 |
17:10 |
Break (20 min) |
14:10 |
17:10 |
Module 10 Lab: Emerging Pathogen Detection and Identification (Gary van Domselaar) |
| 15:00 |
18:00 |
Introduction to Integrative Assignment |
14:30 |
17:30 |
Module 4: Phylogenetic Analysis (Fiona Brinkman) - interactive portion |
14:30 |
17:30 |
Module 6 Lab pt.1: Bacterial Pathogen Genomic Analysis - Genome-based Subtyping (Ed Taboada) |
14:30 |
17:30 |
Module 8: Phylodynamics (Finlay Maguire) |
15:40 |
18:40 |
Integrative Assignment Review |
| 16:00 |
19:00 |
Finished |
15:00 |
18:00 |
Finished |
15:30 |
18:30 |
Finished |
15:30 |
18:30 |
Finished |
16:10 |
19:10 |
Survey and Closing Remarks |
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16:00 |
19:00 |
Optional: Integrative Assignment Review (Vancouver TAs) |
16:30 |
19:30 |
Optional: Integrative Assignment Review (Vancouver TAs) |
16:30 |
19:30 |
Optional: Integrative Assignment Review (Vancouver TAs) |
16:30 |
19:30 |
Finished |
