Microbiome Analysis 2023
Please Note
To ensure everyone can smoothly connect to AWS during the workshop, we will be hosting a virtual office hour on Tuesday, July 4, 2023 from 2-3pm MST. It will use a drop-in format and we highly recommend attending. A Zoom link will be sent out shortly beforehand.
| Time (Mountain) | Wednesday, July 5 | Time (Mountain) | Thursday, July 6 | Time (Mountain) | Friday, July 7 |
|---|---|---|---|---|---|
| 8:30 | Arrivals & Check-in | 8:30 | Arrivals | 8:30 | Arrivals |
| 9:00 | Module 1: Introduction (John Parkinson) | 9:00 | Module 4: Intro to MGS Lecture (Morgan Langille) | 9:00 | Module 6: Metatranscriptomics (John Parkinson) |
| 9:30 | Student Intros 1 | ||||
| 10:00 | Cloud Computing (Hena Ramay/Zhibin Lu) | ||||
| 10:30 | Break (15min) | 10:15 | Break (15min) | 10:00 | Break (15 min) |
| 10:45 | Module 2: Marker Gene Taxonomic Analysis (Morgan Langille) | 10:30 | Module 4 Lab (Robyn Wright) | 10:15 | Module 6 Lab (Ryan Chieu) |
| 11:45 | Module 2 Lab: 16S Lab (Robyn Wright) | ||||
| 12:30 | Lunch (1h) + Student Intros 2 | 12:30 | Lunch (1h) + Student Intros 3 | 12:15 | Lunch (45 min) |
| 13:30 | Module 2 Lab: 16S Lab cont (Robyn Wright) | 13:30 | Module 5: Metagenome Assembly & MAGs (Laura Sycuro) | 13:00 | Module 7: Sample collection and biases (Laura Sycuro) |
| 14:30 | Module 3: Stats and Visualization Lecture (Hena Ramay) | 14:30 | Module 5 Lab: MAGs (Kevin Muirhead, Hena Ramay) | 14:00 | Module 8: Setting Up a Clinical Microbiome Study (Anita Kozyrskyj) |
| 15:30 | Break (15min) - Class Photo | 15:30 | Break (15min) | 15:00 | Survey & Closing Remarks |
| 15:45 | Module 3: Stats and Visualization Lab (Hena Ramay/Robyn Wright) | 15:45 | Module 5 Lab continued (Kevin Muirhead, Hena Ramay) | ||
| 17:00 | Finished | 17:00 | Finished | 15:30 | Finished |
| 18:00 | Social at The Banquet Bar |