| 08:30 - 09:00 |
Arrivals & Check-in |
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08:30 - 09:00 |
Arrivals |
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| 9:00 - 9:30 |
Welcome (Nia Hughes) |
Welcome remarks and workshop overview |
9:00 - 9:30 |
Recap of Day 1 and Introduction to Day 2 (Larry) |
|
| 9:30 - 10:30 |
Sequencing Platforms and Technologies (Bernard) |
Overview of different sequencing platforms and their applications |
9:30 - 11:00 |
Sequence Analysis (Larry) |
Aligning sequences, reference sequences, and data analysis tools |
| 10:30 - 11:00 |
Break |
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11:00 - 11:30 |
Break |
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| 11:00 - 12:00 |
Laboratory Operations and Sample Preparation (Bernard) |
General laboratory operations and sample/library preparation |
11:30 - 13:00 |
Hands-on Exercise: Sequence Quality and Variant Review (Larry) |
FastQC output analysis, aligned sequence QC, and variant review |
| 12:00 - 13:00 |
Lunch Break |
|
13:00 - 14:00 |
Lunch Break |
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| 13:00-14:00 |
Hands-on Exercise/Discussion (Bernard) |
Exercise on different platforms and matching technology with applications |
14:00 - 15:00 |
Cancer Genomics and Interpretation (Alex) |
Information assessment in cancer genomics and annotating variants |
| 14:00 - 15:30 |
Lab Tours (Bernard) |
Tours of Illumina, Ion Torrent, and Nanopore sequencing labs |
15:00 - 15:30 |
Break |
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| 15:30 - 16:00 |
Break |
- |
15:30 - 16:00 |
Clinical Reporting (Alex) |
Typical content in clinical reports and generating reports with Djerba |
| 16:00 - 17:00 |
Data Generated by Different Platforms (Larry) |
Run folders, basecalling, and file formats |
16:00 - 17:00 |
Hands-on Exercises (Alex) |
Generating and reviewing clinical reports |
| 17:00 - 17:30 |
Q&A and Wrap-Up (Day 1) |
End of Day 1 discussions |
17:00 - 17:30 |
Q&A and Wrap-Up (Day 2) |
Summary, feedback, closing remarks |
| 17:30 |
Finished |
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17:30 |
Finished |
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