R (>= 4.1), BiocGenerics, SummarizedExperiment

Biobase, S4Vectors, MultiAssayExperiment, MatrixGenerics,
piano, BiocParallel, parallel, BumpyMatrix, checkmate, methods,
stats, utils, graphics, grDevices, lsa, data.table, crayon,
glue, rlang, bench

pander, markdown, BiocStyle, rmarkdown, knitr, formatR,
testthat

'allGenerics.R' 'immutable-class.R' 'LongTable-class.R'
'CoreSet-class.R' 'CoreSet-accessors.R' 'CoreSet-utils.R'
'DataMapper-class.R' 'LongTable-accessors.R'
'LongTable-utils.R' 'LongTableDataMapper-class.R'
'LongTableDataMapper-accessors.R'
'TreatmentResponseExperiment-class.R' 'TREDataMapper-class.R'
'adaptiveMatthewCor.R' 'aggregate-methods.R'
'callingWaterfall.R' 'connectivityScore.R' 'cosinePerm.R'
'datasets.R' 'deprecated.R' 'endoaggregate-methods.R'
'globals.R' 'gwc.R' 'matthewCor.R' 'mergeAssays-method.R'
'methods-coerce.R' 'methods-dim.R' 'methods-dimnames.R'
'methods-drugSensitivitySig.R' 'methods-guessMapping.R'
'methods-metaConstruct.R' 'methods-subsetTo.R'
'optimizeCoreGx.R' 'updateObject-methods.R' 'utilities.R'
'utils-iteration.R' 'utils-messages.R' 'utils-optimization.R'
'utils-testing.R' 'utils-updateS4.R'

Jermiah Joseph [aut],
  Petr Smirnov [aut],
  Ian Smith [aut],
  Christopher Eeles [aut],
  Feifei Li [aut],
  Benjamin Haibe-Kains [aut, cre]

The SummarizedExperiment container contains one or more assays,
	each represented by a matrix-like object of numeric or other mode.
	The rows typically represent genomic ranges of interest and the columns
	represent samples.

Genetics, Infrastructure, Sequencing, Annotation, Coverage,
GenomeAnnotation

c(
	person("Martin", "Morgan", role="aut"),
	person("Valerie", "Obenchain", role="aut"),
	person("Jim", "Hester", role="aut"),
	person("Hervé", "Pagès", role=c("aut", "cre"),
		email="hpages.on.github@gmail.com"))

R (>= 4.0.0), methods, MatrixGenerics (>= 1.1.3),
GenomicRanges (>= 1.55.2), Biobase

utils, stats, tools, Matrix, BiocGenerics (>= 0.37.0),
S4Vectors (>= 0.33.7), IRanges (>= 2.23.9), GenomeInfoDb (>=
1.13.1), S4Arrays (>= 1.1.1), DelayedArray (>= 0.27.1)