SummarizedExperiment (>= 1.3.81), R (>= 3.5.0)

Biobase, BiocBaseUtils, BiocGenerics, DelayedArray,
GenomicRanges, IRanges, methods, S4Vectors, tidyr, utils

BiocStyle, HDF5Array, knitr, maftools, R.rsp,
RaggedExperiment, reshape2, rmarkdown, survival, survminer,
testthat, UpSetR

'ExperimentList-class.R' 'MultiAssayExperiment-class.R'
'MatchedAssayExperiment-class.R' 'subsetBy-methods.R'
'MultiAssayExperiment-subset.R'
'MultiAssayExperiment-methods.R'
'MultiAssayExperiment-helpers.R' 'MultiAssayExperiment-pkg.R'
'MultiAssayExperimentToMAF.R' 'assay-methods.R' 'data.R'
'hasAssay.R' 'listToMap.R' 'mapToList.R' 'prepMultiAssay.R'
'reexports.R' 'saveHDF5MultiAssayExperiment.R' 'upsetSamples.R'
'utilities.R'

Marcel Ramos [aut, cre] (<https://orcid.org/0000-0002-3242-0582>),
  Martin Morgan [aut, ctb],
  Lori Shepherd [ctb],
  Hervé Pagès [ctb],
  Vincent J Carey [aut, ctb],
  Levi Waldron [aut],
  MultiAssay SIG [ctb]

This package uses the source code of zlib-1.2.5 to create
  libraries for systems that do not have these available via other
  means (most Linux and Mac users should have system-level access to
  zlib, and no direct need for this package). See the vignette for
  instructions on use.

A Simple and Robust JSON Parser and Generator for R

c(
    person("Jeroen", "Ooms", role = c("aut", "cre"), email = "jeroenooms@gmail.com",
      comment = c(ORCID = "0000-0002-4035-0289")),
    person("Duncan", "Temple Lang", role = "ctb"),
    person("Lloyd", "Hilaiel", role = "cph", comment="author of bundled libyajl"))

A reasonably fast JSON parser and generator, optimized for statistical 
    data and the web. Offers simple, flexible tools for working with JSON in R, and
    is particularly powerful for building pipelines and interacting with a web API. 
    The implementation is based on the mapping described in the vignette (Ooms, 2014).
    In addition to converting JSON data from/to R objects, 'jsonlite' contains 
    functions to stream, validate, and prettify JSON data. The unit tests included 
    with the package verify that all edge cases are encoded and decoded consistently 
    for use with dynamic data in systems and applications.