A powerful and elegant high-level data visualization
  system inspired by Trellis graphics, with an emphasis on
  multivariate data. Lattice is sufficient for typical graphics needs,
  and is also flexible enough to handle most nonstandard requirements.
  See ?Lattice for an introduction.

Deepayan Sarkar [aut, cre] (<https://orcid.org/0000-0003-4107-1553>),
  Felix Andrews [ctb],
  Kevin Wright [ctb] (documentation),
  Neil Klepeis [ctb],
  Johan Larsson [ctb] (miscellaneous improvements),
  Zhijian (Jason) Wen [cph] (filled contour code),
  Paul Murrell [ctb],
  Stefan Eng [ctb] (violin plot improvements),
  Achim Zeileis [ctb] (modern colors),
  Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and
    lsegments)

Software for the integration of multi-omics experiments in
Bioconductor

c(person("Marcel", "Ramos", email = "marcel.ramos@roswellpark.org",
    role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3242-0582")),
    person("Levi", "Waldron", email = "lwaldron.research@gmail.com",
    role = "aut"),
    person("MultiAssay", "SIG", email = "biocmultiassay@googlegroups.com",
    role = "ctb"))

MultiAssayExperiment harmonizes data management of
    multiple experimental assays performed on an overlapping set of specimens.
    It provides a familiar Bioconductor user experience by extending concepts
    from SummarizedExperiment, supporting an open-ended mix of standard data
    classes for individual assays, and allowing subsetting by genomic ranges
    or rownames. Facilities are provided for reshaping data into wide and
    long formats for adaptability to graphing and downstream analysis.

R (>= 4.2.0), SummarizedExperiment (>= 1.3.81)

methods, GenomicRanges (>= 1.25.93), BiocBaseUtils,
BiocGenerics, DelayedArray, S4Vectors (>= 0.23.19), IRanges,
Biobase, stats, tidyr, utils

BiocStyle, HDF5Array (>= 1.19.17), knitr, maftools (>=
2.7.10), rmarkdown, R.rsp, RaggedExperiment, UpSetR, survival,
survminer, testthat

'ExperimentList-class.R' 'MultiAssayExperiment-class.R'
'MatchedAssayExperiment-class.R' 'subsetBy-methods.R'
'MultiAssayExperiment-subset.R'
'MultiAssayExperiment-methods.R'
'MultiAssayExperiment-helpers.R' 'MultiAssayExperiment-pkg.R'
'MultiAssayExperimentToMAF.R' 'assay-methods.R' 'data.R'
'hasAssay.R' 'listToMap.R' 'mapToList.R' 'prepMultiAssay.R'
'reexports.R' 'saveHDF5MultiAssayExperiment.R' 'upsetSamples.R'
'utilities.R'