Platform for integrative analysis of omics data

c(person("Leif", "Varemo Wigge", email =
"piano.rpkg@gmail.com", role = "aut"), person("Intawat",
"Nookaew", email = "piano.rpkg@gmail.com", role = "aut"))

Leif Varemo Wigge <piano.rpkg@gmail.com> and Intawat Nookaew <piano.rpkg@gmail.com>

BiocGenerics, Biobase, gplots, igraph, relations, marray,
fgsea, shiny, DT, htmlwidgets, shinyjs, shinydashboard,
visNetwork, scales, grDevices, graphics, stats, utils, methods

yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM,
gtools, biomaRt, snowfall, AnnotationDbi, knitr, rmarkdown,
BiocStyle

Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.

Microarray, Preprocessing, QualityControl,
DifferentialExpression, Visualization, GeneExpression,
GeneSetEnrichment, Pathways

c(
    person("Hadley", "Wickham", , "hadley@posit.co", role = "aut",
           comment = c(ORCID = "0000-0003-4757-117X")),
    person("Jennifer", "Bryan", , "jenny@posit.co", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-6983-2759")),
    person("Malcolm", "Barrett", , "malcolmbarrett@gmail.com", role = "aut",
           comment = c(ORCID = "0000-0003-0299-5825")),
    person("Andy", "Teucher", , "andy.teucher@posit.co", role = "aut",
           comment = c(ORCID = "0000-0002-7840-692X")),
    person("Posit Software, PBC", role = c("cph", "fnd"))
  )

Automate package and project setup tasks that are otherwise
    performed manually. This includes setting up unit testing, test
    coverage, continuous integration, Git, 'GitHub', licenses, 'Rcpp',
    'RStudio' projects, and more.

covr, knitr, magick, pkgload (>= 1.3.2.1), rmarkdown,
roxygen2 (>= 7.1.2), spelling (>= 1.2), styler (>= 1.2.0),
testthat (>= 3.1.8)

Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
  Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
  Malcolm Barrett [aut] (<https://orcid.org/0000-0003-0299-5825>),
  Andy Teucher [aut] (<https://orcid.org/0000-0002-7840-692X>),
  Posit Software, PBC [cph, fnd]