pt.sex	pt.age	tumour.stage	tumour.aneuploidy	tumour.fraction.genome.altered	tumour.hypoxia	tumour.moffitt.cluster	tumour.cn.cluster
TCGA.2J.AAB1	Male	65	STAGE IIB	2	0.0697	-24	classical	Low
TCGA.2J.AAB4	Male	48	STAGE IIB	6	0.1518	0	classical	Low
TCGA.2J.AAB6	Male	75	STAGE IIA	13	0.3743	48	basal	Low
TCGA.2J.AAB8	Male	71	STAGE IIB	9	0.0662	-6	classical	High
TCGA.2J.AAB9	Female	70	STAGE IIB	0	0.0043	-16	basal	Low
TCGA.2J.AABA	Male	55	STAGE IIB	6	0.0977	-22	classical	Low
TCGA.2J.AABE	Male	73	STAGE IIA	5	0.1914	-18	basal	Low
TCGA.2J.AABF	Male	73	STAGE IIB	9	0.078	-16	classical	High
TCGA.2J.AABH	Male	61	STAGE IIA	11	0.3237	0	classical	High
TCGA.2J.AABI	Female	55	STAGE IIA	13	0.3565	22	basal	High
TCGA.2J.AABK	Male	71	STAGE IIB	NA	0.0324	-2	classical	Low
TCGA.2J.AABO	Male	43	STAGE IIB	22	0.1163	14	basal	High
TCGA.2J.AABR	Female	60	STAGE IIA	NA	0.001	-24	basal	Low
TCGA.2J.AABT	Female	72	STAGE IIB	8	0.035	-24	classical	Low
TCGA.2J.AABU	Male	56	STAGE IIB	8	0.2572	22	basal	High
TCGA.2J.AABV	Male	74	STAGE IIB	0	0.004	0	classical	Low
TCGA.2L.AAQA	Male	76	STAGE IIB	5	0.1927	24	classical	Low
TCGA.2L.AAQE	Male	56	STAGE IIB	27	0.2248	-4	basal	Low
TCGA.2L.AAQI	Male	66	STAGE IIB	9	0.012	2	basal	High
TCGA.2L.AAQJ	Female	49	STAGE III	6	0.1656	12	classical	Low
TCGA.2L.AAQL	Male	82	STAGE IIB	21	0.235	2	classical	Low
TCGA.3A.A9I5	Male	57	NA	4	0.233	8	classical	Low
TCGA.3A.A9I7	Male	45	STAGE IIB	0	3e-04	-16	classical	non-Aneuploid
TCGA.3A.A9I9	Male	67	STAGE IIA	5	0.2688	6	classical	Low
TCGA.3A.A9IB	Female	69	STAGE IIB	10	0.21	50	basal	Low
TCGA.3A.A9IC	Female	61	STAGE IIB	12	0.3011	22	classical	Low
TCGA.3A.A9IH	Female	66	STAGE IA	8	0.1649	22	basal	Low
TCGA.3A.A9IU	Male	65	STAGE IIB	9	0.1821	14	basal	Low
TCGA.3A.A9IX	Male	40	STAGE IA	0	2e-04	-36	basal	Low
TCGA.3A.A9IZ	Male	47	STAGE IIB	6	0.2827	32	basal	High
TCGA.3A.A9J0	Male	75	STAGE IIB	24	0.4872	30	classical	High
TCGA.3E.AAAY	Male	67	STAGE IIB	NA	3e-04	-16	classical	Low
TCGA.3E.AAAZ	Male	71	STAGE IIA	9	0.2261	-12	classical	Low
TCGA.F2.6879	Male	57	STAGE IIB	9	0.2146	8	classical	Low
TCGA.F2.A44G	Female	79	STAGE IIB	4	0.0757	32	classical	Low
TCGA.F2.A44H	Male	65	STAGE IIA	10	0.024	-24	classical	Low
TCGA.F2.A7TX	Male	77	STAGE IIB	9	0.0445	20	basal	Low
TCGA.F2.A8YN	Male	76	STAGE IIA	8	0.202	-16	basal	Low
TCGA.FB.A4P5	Female	69	STAGE IIB	0	0	-34	basal	non-Aneuploid
TCGA.FB.A4P6	Male	54	STAGE IIB	NA	NA	-44	classical	non-Aneuploid
TCGA.FB.A545	Female	72	STAGE IIB	25	0.612	32	basal	High
TCGA.FB.A5VM	Male	74	STAGE IB	8	0.0677	36	basal	Low
TCGA.FB.A78T	Female	71	STAGE IIB	8	0.1291	-6	classical	Low
TCGA.FB.AAPQ	Male	65	STAGE IIB	5	0.2011	22	classical	Low
TCGA.FB.AAPS	Female	62	STAGE IIB	0	1e-04	-8	basal	Low
TCGA.FB.AAPU	Female	41	STAGE IIA	4	0.2542	14	classical	Low
TCGA.FB.AAPY	Male	71	STAGE IIB	4	3e-04	4	classical	Low
TCGA.FB.AAPZ	Male	54	STAGE IIB	21	0.6471	14	basal	High
TCGA.FB.AAQ0	Male	68	STAGE IIA	6	0.1817	32	classical	High
TCGA.FB.AAQ1	Male	49	STAGE IIB	26	0.1766	28	basal	High
TCGA.FB.AAQ2	Female	81	STAGE IIB	16	0.2262	52	basal	High
TCGA.FB.AAQ3	Female	65	STAGE IIB	4	0.1127	22	classical	Low
TCGA.FB.AAQ6	Male	85	STAGE IA	7	0.2782	10	classical	Low
TCGA.H6.8124	Female	56	STAGE IIB	11	0.2604	38	basal	High
TCGA.H6.A45N	Female	88	STAGE IIB	0	0	-30	classical	Low
TCGA.HV.A5A3	Male	50	STAGE IIA	11	0.3207	16	basal	Low
TCGA.HV.A5A4	Female	72	STAGE IIA	3	0.0977	-14	classical	Low
TCGA.HV.A5A5	Female	61	STAGE IIB	NA	0.001	-12	classical	Low
TCGA.HV.A5A6	Female	65	STAGE IIB	17	0.2401	6	classical	High
TCGA.HV.A7OL	Male	70	STAGE IIA	7	0.1153	24	classical	Low
TCGA.HV.AA8V	Male	50	STAGE IIB	NA	0.0072	-4	basal	Low
TCGA.HV.AA8X	Female	75	STAGE IIB	6	0.2315	0	classical	Low
TCGA.HZ.7919	Female	52	STAGE IIB	7	0.1409	2	classical	Low
TCGA.HZ.7922	Female	61	STAGE IIB	25	0.2561	2	classical	High
TCGA.HZ.7925	Male	66	STAGE IIB	9	0.0036	12	basal	Low
TCGA.HZ.7926	Male	57	STAGE IIB	NA	0	2	classical	Low
TCGA.HZ.8001	Male	69	STAGE III	NA	1e-04	26	basal	Low
TCGA.HZ.8002	Male	61	STAGE IIB	0	1e-04	-24	basal	non-Aneuploid
TCGA.HZ.8003	Female	65	STAGE IIB	NA	0.0014	-34	classical	non-Aneuploid
TCGA.HZ.8005	Male	81	STAGE IIB	22	0.1693	28	basal	High
TCGA.HZ.8315	Female	54	STAGE IIA	5	0.0037	-16	basal	Low
TCGA.HZ.8317	Female	69	STAGE IIB	0	0	4	classical	non-Aneuploid
TCGA.HZ.8519	Male	73	STAGE IA	0	0.0033	-50	classical	Low
TCGA.HZ.8636	Female	58	STAGE IV	10	0.2288	8	classical	High
TCGA.HZ.8637	Female	76	STAGE IIB	8	0.0216	-42	classical	High
TCGA.HZ.A49G	Female	58	STAGE IIB	0	5e-04	-24	classical	Low
TCGA.HZ.A49H	Female	68	STAGE IIB	0	0	-22	classical	non-Aneuploid
TCGA.HZ.A49I	Male	77	STAGE IIB	5	0.0842	-18	classical	Low
TCGA.HZ.A4BH	Male	75	STAGE IIB	7	0.0811	-10	basal	High
TCGA.HZ.A4BK	Male	72	STAGE IIB	23	0.0487	-24	classical	Low
TCGA.HZ.A77O	Female	77	STAGE IIB	32	0.314	42	basal	High
TCGA.HZ.A77P	Male	77	STAGE IIB	4	0.002	-12	classical	Low
TCGA.HZ.A77Q	Female	55	STAGE IIB	4	0.0041	0	basal	Low
TCGA.HZ.A8P0	Male	76	STAGE IIB	3	0.1403	0	classical	Low
TCGA.HZ.A8P1	Male	81	STAGE IB	6	0.225	-4	classical	Low
TCGA.HZ.A9TJ	Male	70	STAGE IV	19	0.3589	-10	classical	High
TCGA.IB.7644	Female	65	STAGE IV	6	0.0898	-14	classical	Low
TCGA.IB.7645	Female	44	STAGE IIB	0	0	-18	classical	Low
TCGA.IB.7646	Male	60	STAGE IIB	24	0.1454	32	basal	High
TCGA.IB.7647	Male	41	STAGE IIB	9	0.0299	10	classical	Low
TCGA.IB.7649	Female	73	STAGE IIB	12	0.0238	-38	classical	Low
TCGA.IB.7651	Female	64	STAGE IIB	2	1e-04	4	classical	Low
TCGA.IB.7652	Female	49	STAGE IIB	6	0.2931	-22	classical	High
TCGA.IB.7885	Female	78	STAGE IIB	8	0.0017	26	basal	Low
TCGA.IB.7886	Male	80	STAGE IIB	20	0.1501	-18	classical	Low
TCGA.IB.7887	Female	62	STAGE IIB	8	0.0262	24	basal	Low
TCGA.IB.7888	Female	66	STAGE IIA	0	0.0028	-24	classical	Low
TCGA.IB.7889	Female	85	STAGE IIB	5	0.0178	-6	basal	Low
TCGA.IB.7890	Male	73	STAGE IB	19	0.1198	14	basal	High
TCGA.IB.7891	Female	49	STAGE IIB	4	0.001	-28	classical	Low
TCGA.IB.7893	Male	64	STAGE IIA	26	0.1231	12	basal	High
TCGA.IB.7897	Female	53	STAGE IIB	0	0	-32	basal	non-Aneuploid
TCGA.IB.8126	Female	79	STAGE III	0	0.0027	-36	classical	non-Aneuploid
TCGA.IB.8127	Male	59	STAGE IIB	26	0.2179	4	basal	High
TCGA.IB.A5SO	Male	71	STAGE IIB	0	0.003	-10	classical	Low
TCGA.IB.A5SP	Male	77	STAGE IIA	11	0.4525	-6	classical	High
TCGA.IB.A5SQ	Female	56	STAGE IB	0	0	8	basal	Low
TCGA.IB.A5SS	Female	64	STAGE IIB	7	0.2517	28	basal	Low
TCGA.IB.A5ST	Female	64	STAGE IIB	0	0	-22	classical	non-Aneuploid
TCGA.IB.A6UF	Male	63	STAGE IIB	13	0.2707	32	basal	Low
TCGA.IB.A6UG	Male	65	STAGE IIB	21	0.0683	-2	basal	Low
TCGA.IB.A7LX	Male	57	STAGE IIB	13	0.428	18	basal	High
TCGA.IB.A7M4	Male	81	STAGE IIB	7	0.1441	30	basal	High
TCGA.IB.AAUM	Male	76	STAGE IIB	0	0	-32	classical	Low
TCGA.IB.AAUN	Female	74	STAGE IB	9	0.2565	-6	basal	High
TCGA.IB.AAUO	Female	64	STAGE IIB	8	0.1447	42	basal	Low
TCGA.IB.AAUP	Male	68	STAGE IIB	0	0.0048	-44	classical	Low
TCGA.IB.AAUQ	Male	50	STAGE IIB	8	0.0218	40	basal	Low
TCGA.IB.AAUR	Male	67	STAGE IIB	0	0	-34	basal	non-Aneuploid
TCGA.IB.AAUS	Female	84	STAGE IIB	0	0	-6	basal	non-Aneuploid
TCGA.IB.AAUT	Male	65	STAGE IIB	0	0.0013	-28	classical	non-Aneuploid
TCGA.IB.AAUU	Male	35	STAGE IIB	23	0.1885	12	classical	High
TCGA.LB.A7SX	Female	74	STAGE IIB	14	0.5679	2	basal	High
TCGA.LB.A8F3	Female	64	STAGE IIA	23	0.2038	-4	classical	Low
TCGA.LB.A9Q5	Female	63	STAGE IIB	NA	0	-16	basal	non-Aneuploid
TCGA.M8.A5N4	Female	48	STAGE IIA	22	0.1305	22	basal	Low
TCGA.OE.A75W	Male	75	STAGE IIA	8	0.247	18	classical	Low
TCGA.PZ.A5RE	Female	44	STAGE IIB	9	0.1924	16	classical	Low
TCGA.Q3.A5QY	Male	58	STAGE IIB	0	0	-44	basal	non-Aneuploid
TCGA.Q3.AA2A	Female	64	STAGE IB	4	0.154	6	classical	Low
TCGA.RB.A7B8	Female	81	STAGE IIB	5	0.0902	-2	classical	Low
TCGA.RB.AA9M	Male	43	STAGE IIB	NA	1e-04	-14	basal	Low
TCGA.S4.A8RM	Male	67	STAGE IIB	7	0.2143	-42	classical	Low
TCGA.S4.A8RO	Female	75	STAGE IIB	6	0.3134	40	basal	High
TCGA.S4.A8RP	Female	77	STAGE IIB	5	0.2501	-24	classical	Low
TCGA.US.A774	Female	76	STAGE IIB	0	2e-04	-16	classical	Low
TCGA.US.A776	Male	61	STAGE IIA	4	0.3408	6	classical	High
TCGA.US.A779	Female	54	STAGE IIB	6	0.1675	-8	classical	Low
TCGA.US.A77E	Male	73	STAGE IIB	5	0.079	0	classical	Low
TCGA.US.A77G	Male	64	STAGE IIB	5	0.1246	-20	classical	Low
TCGA.XD.AAUG	Female	66	STAGE IV	1	1e-04	-18	classical	Low
TCGA.XD.AAUH	Female	57	STAGE IIB	NA	1e-04	-40	basal	non-Aneuploid
TCGA.XD.AAUI	Female	50	STAGE IIB	7	0.0333	30	basal	Low
TCGA.XD.AAUL	Male	56	STAGE IIA	4	0.1501	-20	basal	Low
TCGA.XN.A8T3	Male	67	STAGE IB	25	0.0274	10	basal	Low
TCGA.XN.A8T5	Female	53	STAGE IB	0	0	-28	basal	non-Aneuploid
TCGA.YB.A89D	Male	59	STAGE IIB	21	0.0016	4	classical	Low
TCGA.YH.A8SY	Female	73	STAGE III	7	0.2168	42	basal	High
TCGA.YY.A8LH	Female	61	STAGE IIB	8	0.275	22	classical	Low
TCGA.Z5.AAPL	Female	74	STAGE IIA	NA	0	-52	classical	non-Aneuploid
