Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION%MSIGDBHALLMARK%HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	ranked_basal_vs_classical
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_pos
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION%MSIGDBHALLMARK%HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.7431925
Normalized Enrichment Score (NES)	2.533237
Nominal p-value	0.0
FDR q-value	0.0
FWER p-Value	0.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	SNAI2	42	13.427	0.0321	Yes
2	TGFBI	53	12.463	0.0636	Yes
3	CRLF1	94	10.132	0.0874	Yes
4	LAMC2	104	9.921	0.1123	Yes
5	CDH2	107	9.799	0.1374	Yes
6	NT5E	127	9.373	0.1604	Yes
7	PTHLH	133	9.121	0.1835	Yes
8	BMP1	192	7.793	0.2003	Yes
9	MMP14	197	7.723	0.2199	Yes
10	BDNF	216	7.513	0.2382	Yes
11	PLOD2	249	6.936	0.2542	Yes
12	PLOD1	302	6.230	0.2673	Yes
13	GPC1	314	6.092	0.2824	Yes
14	CD44	333	5.927	0.2966	Yes
15	FSTL3	334	5.927	0.3118	Yes
16	ITGB1	381	5.651	0.3237	Yes
17	POSTN	389	5.585	0.3377	Yes
18	LOX	393	5.578	0.3518	Yes
19	EMP3	403	5.469	0.3654	Yes
20	VEGFC	408	5.438	0.3791	Yes
21	GAS1	462	5.076	0.3892	Yes
22	MCM7	524	4.709	0.3979	Yes
23	TGFB1	563	4.495	0.4073	Yes
24	FAP	585	4.413	0.4174	Yes
25	LOXL2	596	4.378	0.4281	Yes
26	COL5A3	611	4.301	0.4384	Yes
27	LAMA3	612	4.291	0.4494	Yes
28	CALU	681	4.005	0.4559	Yes
29	ITGB5	703	3.937	0.4648	Yes
30	ADAM12	707	3.927	0.4747	Yes
31	ITGAV	754	3.808	0.4819	Yes
32	COL1A1	778	3.741	0.4903	Yes
33	NNMT	789	3.715	0.4992	Yes
34	COL3A1	801	3.689	0.5081	Yes
35	MMP2	882	3.459	0.5125	Yes
36	ITGB3	883	3.456	0.5214	Yes
37	COL1A2	889	3.446	0.5300	Yes
38	DKK1	901	3.428	0.5382	Yes
39	GPX7	909	3.412	0.5465	Yes
40	AREG	939	3.336	0.5535	Yes
41	HTRA1	983	3.252	0.5594	Yes
42	FSTL1	984	3.248	0.5678	Yes
43	PDLIM4	1000	3.218	0.5752	Yes
44	FGF2	1002	3.212	0.5834	Yes
45	BASP1	1005	3.208	0.5915	Yes
46	CD59	1022	3.182	0.5988	Yes
47	THBS1	1053	3.125	0.6051	Yes
48	ENO2	1080	3.060	0.6115	Yes
49	SPOCK1	1124	2.987	0.6168	Yes
50	PFN2	1151	2.940	0.6229	Yes
51	LAMC1	1157	2.932	0.6301	Yes
52	RGS4	1163	2.924	0.6374	Yes
53	COL5A2	1181	2.895	0.6439	Yes
54	PRRX1	1193	2.871	0.6506	Yes
55	TIMP3	1194	2.870	0.6580	Yes
56	NID2	1217	2.831	0.6640	Yes
57	VCAN	1218	2.831	0.6713	Yes
58	SPARC	1302	2.706	0.6736	Yes
59	TNC	1380	2.589	0.6759	Yes
60	GJA1	1478	2.431	0.6767	Yes
61	MXRA5	1540	2.326	0.6793	Yes
62	CYR61	1562	2.298	0.6840	Yes
63	FBLN2	1567	2.294	0.6897	Yes
64	CTHRC1	1604	2.257	0.6935	Yes
65	FOXC2	1751	2.103	0.6907	Yes
66	CXCL1	1761	2.097	0.6956	Yes
67	THY1	1787	2.075	0.6995	Yes
68	IL6	1797	2.068	0.7043	Yes
69	EDIL3	1840	2.033	0.7072	Yes
70	COL12A1	1856	2.019	0.7116	Yes
71	PCOLCE	1891	1.985	0.7148	Yes
72	TFPI2	1897	1.979	0.7196	Yes
73	LAMA1	1909	1.969	0.7240	Yes
74	INHBA	1960	1.916	0.7261	Yes
75	TNFRSF12A	2026	1.864	0.7273	Yes
76	THBS2	2045	1.848	0.7310	Yes
77	CXCL6	2153	1.764	0.7296	Yes
78	IGFBP4	2210	1.719	0.7308	Yes
79	COL16A1	2226	1.709	0.7344	Yes
80	VCAM1	2233	1.707	0.7384	Yes
81	NOTCH2	2322	1.647	0.7377	Yes
82	IL15	2389	1.599	0.7382	Yes
83	COL4A2	2525	1.526	0.7345	Yes
84	COL4A1	2535	1.520	0.7379	Yes
85	PLAUR	2588	1.491	0.7388	Yes
86	DPYSL3	2794	1.383	0.7309	Yes
87	MFAP5	2816	1.375	0.7333	Yes
88	CDH11	2979	1.291	0.7275	Yes
89	GLIPR1	2984	1.288	0.7306	Yes
90	LOXL1	2998	1.279	0.7332	Yes
91	FERMT2	3001	1.278	0.7363	Yes
92	PCOLCE2	3060	1.245	0.7363	Yes
93	ITGA2	3067	1.242	0.7391	Yes
94	NTM	3098	1.231	0.7406	Yes
95	VEGFA	3178	1.194	0.7393	Yes
96	CTGF	3214	1.177	0.7403	Yes
97	FBN1	3218	1.176	0.7432	Yes
98	SGCG	3451	1.082	0.7330	No
99	SDC1	3468	1.075	0.7349	No
100	TNFRSF11B	3572	1.034	0.7318	No
101	FLNA	3630	1.007	0.7311	No
102	SERPINE2	3756	0.959	0.7266	No
103	GADD45A	4105	0.825	0.7093	No
104	MSX1	4130	0.818	0.7100	No
105	TNFAIP3	4169	0.805	0.7100	No
106	SDC4	4457	0.715	0.6957	No
107	ACTA2	4500	0.700	0.6952	No
108	COL8A2	4509	0.695	0.6965	No
109	GREM1	4826	0.613	0.6804	No
110	DST	4869	0.599	0.6796	No
111	CXCL12	4893	0.594	0.6799	No
112	FBN2	5471	0.465	0.6488	No
113	DCN	5625	0.430	0.6413	No
114	GADD45B	5766	0.400	0.6345	No
115	PTX3	5777	0.399	0.6350	No
116	SFRP1	5829	0.390	0.6331	No
117	GEM	5880	0.381	0.6313	No
118	SGCB	5882	0.381	0.6322	No
119	PMP22	5930	0.372	0.6306	No
120	SPP1	5978	0.361	0.6288	No
121	PLOD3	6087	0.342	0.6237	No
122	WIPF1	6255	0.315	0.6151	No
123	MMP3	6314	0.306	0.6127	No
124	PPIB	6327	0.304	0.6128	No
125	SGCD	6339	0.302	0.6130	No
126	CADM1	6619	0.261	0.5980	No
127	MAGEE1	6834	0.232	0.5866	No
128	ECM2	6877	0.225	0.5849	No
129	SCG2	7171	0.186	0.5690	No
130	SLIT2	7256	0.176	0.5647	No
131	SLIT3	7271	0.173	0.5644	No
132	COMP	7727	0.117	0.5392	No
133	CALD1	8260	0.065	0.5096	No
134	OXTR	8590	0.035	0.4913	No
135	FBLN5	8800	0.012	0.4796	No
136	TPM1	8993	-0.007	0.4689	No
137	MYLK	9285	-0.033	0.4527	No
138	JUN	9463	-0.049	0.4429	No
139	SNTB1	9478	-0.051	0.4423	No
140	MGP	10019	-0.115	0.4124	No
141	MATN3	10736	-0.209	0.3729	No
142	APLP1	11064	-0.255	0.3552	No
143	CDH6	11144	-0.266	0.3515	No
144	FAS	11297	-0.289	0.3437	No
145	TIMP1	11325	-0.294	0.3430	No
146	FUCA1	11837	-0.388	0.3154	No
147	ABI3BP	11999	-0.416	0.3074	No
148	TGFBR3	12567	-0.539	0.2771	No
149	RHOB	12633	-0.554	0.2749	No
150	SFRP4	13027	-0.646	0.2545	No
151	IGFBP2	13053	-0.654	0.2548	No
152	COPA	14056	-0.948	0.2012	No
153	CAP2	15160	-1.461	0.1432	No
154	ID2	15663	-1.793	0.1198	No
155	FZD8	15716	-1.826	0.1215	No
156	SLC6A8	16697	-3.040	0.0745	No