Welcome to Pathways and Network Analysis of -Omics Data 2019.
The course schedule can be found here.
Meet your faculty here.
CLASS MATERIALS: You can download the printed course manual here.
Laptop Setup Instructions
Instructions to setup your laptop can be found here.
Pre-readings and pre-work can be found here here.
It is in your best interest to complete these before the workshop.
Module 1: Introduction to Pathway and Network Analysis
Module 2 Finding Over-Represented Pathways
Module 3: Network Visualization and Analysis with Cytoscape
## Module 3 Lab
Module 4: More Depth on Network and Pathway Analysis
Module 5: Gene Function Prediction
Module 6: Regulatory Network Analysis
EnrichmentMap (GSEA and g:Profiler) step by step protocol: https://www.biorxiv.org/content/early/2017/12/12/232835 and https://github.com/BaderLab/Cytoscape_workflows
Interacting with Cytoscape using CyRest and command lines (for advanced users): https://github.com/cytoscape/cytoscape-automation/blob/master/for-scripters/R/advanced-cancer-networks-and-data-rcy3.Rmd
Thank you for attending the Pathway and Network Analysis of Omics Data workshop! Help us make this workshop better by filling out our survey.