RNA-seq Analysis 2024
Please Note
There will be an Amazon Web Services/Unix review session held in advance of the workshop. It will be held on Zoom, included in your registration fee, and is optional but highly recommended. The first module (10:10 - 11:10AM) will teach you how to connect to AWS so you can complete the workshop labs. We recommend all students attend this portion. The remaining sections will teach the basics of Unix and using the command line; we recommend that participants who do not have experience with the command line attend this portion.
| Time (EDT) | June 17 | Time (EDT) | June 18 | Time (EDT) | June 19 |
|---|---|---|---|---|---|
| 8:30 | Arrivals & Check-in | 8:30 | Arrivals | 8:30 | Arrivals |
| 9:00 | Welcome (Nia Hughes) | 9:00 | Module 2 - RNA alignment (practical) | 9:00 | Module 3 - RNA Expression and Differential Expression (Practical cont’d) |
| 9:30 | Module 1 - Intro to RNAseq course/concepts (lecture) (Malachi Griffith) | ||||
| 10:30 | Break (30min) | 11:00 | Break (30min) | 11:00 | Break (30min) |
| 11:00 | AWS Login and Setup | 11:30 | Module 2 - RNA alignment (practical cont’d) | 11:30 | Module 4 - Pathway Analysis (Lecture) (Malachi Griffith) |
| 11:30 | Module 1 - RNAseq inputs and QC (practical) | ||||
| 12:30 | Lunch (1h) | 12:30 | Lunch (1h) | 12:30 | Lunch + Class Photo (1h) |
| 13:30 | Module 1 - RNAseq inputs and QC (practical cont’d) | 13:30 | Module 3 - RNA Expression and Differential Expression (Lecture) (Obi Griffith) | 13:30 | Module 4 - Pathway Analysis (Practical) |
| 15:30 | Break (30min) | 14:30 | Break (30min) | 15:30 | Break (30min) |
| 16:00 | Module 2 - RNA alignment concepts and file formats (lecture) (Obi Griffith) | 15:00 | Module 3 - RNA Expression and Differential Expression (Practical) | 16:00 | Module 4 - Batch Correction (Practical) |
| 17:30 | (Optional) Team Assignment | 17:30 | (Optional) Team Assignment | 17:00 | Survey & Closing Remarks |
| 18:30 | End of Day 1 | 18:30 | End of Day 2 | 17:30 | End of Day 3 |