| Time (Mountain) | Time (Eastern) | Activity |
|---|---|---|
| 7:30 | 9:30 | Arrivals & Check-in |
| 8:00 | 10:00 | Welcome (Nia Hughes) |
| 8:30 | 10:30 | Module 1 - Intro to RNAseq course/concepts (lecture) (Malachi Griffith) |
| 9:30 | 11:30 | Break (30min) |
| 10:00 | 12:00 | AWS Login and Setup |
| 10:30 | 12:30 | Module 1 - RNAseq inputs and QC (practical) |
| 11:30 | 13:30 | Lunch (1h) |
| 12:30 | 14:30 | Module 1 - RNAseq inputs and QC (practical cont'd) |
| 14:30 | 16:30 | Break (30min) |
| 15:00 | 17:00 | Module 2 - RNA alignment concepts and file formats (lecture) (Obi Griffith) |
| 16:30 | 18:30 | (Optional) Team Assignment |
| 17:00 | 19:00 | End of Day 1 |
| Time (Mountain) | Time (Eastern) | Activity |
|---|---|---|
| 7:30 | 9:30 | Arrivals |
| 8:00 | 10:00 | Module 2 - RNA alignment (practical) |
| 10:00 | 12:00 | Break (30min) |
| 10:30 | 12:30 | Module 2 - RNA alignment (practical cont'd) |
| 11:30 | 13:30 | Lunch (1h) |
| 12:30 | 14:30 | Module 3 - RNA Expression and Differential Expression (Lecture) (Obi Griffith) |
| 13:30 | 15:30 | Break (30min) |
| 14:00 | 16:00 | Module 3 - RNA Expression and Differential Expression (Practical) |
| 16:30 | 18:30 | (Optional) Team Assignment |
| 17:30 | 19:30 | End of Day 2 |
| Time (Mountain) | Time (Eastern) | Activity |
|---|---|---|
| 7:30 | 9:30 | Arrivals |
| 8:00 | 10:00 | Module 3 - RNA Expression and Differential Expression (Practical cont'd) |
| 10:00 | 12:00 | Break (30min) |
| 10:30 | 12:30 | Module 3 - Cont'd (Malachi Griffith) |
| 11:30 | 13:30 | Lunch + Class Photo (1h) |
| 12:30 | 14:30 | Module 3 - Pathway Analysis (Practical) |
| 14:30 | 16:30 | Break (30min) |
| 15:00 | 17:00 | Module 3 - Batch Correction (Practical) |
| 16:00 | 18:00 | Survey & Closing Remarks |
| 16:30 | 18:30 | End of Day 3 |