Epigenomic Data Analysis 2018

Welcome

Welcome to Epigenomic Data Analysis 2018.

The course schedule can be found here.

Pre-readings, pre-work, and laptop setup instructions can be found here.

We are using Google Classroom for discussion. Join the Class at https://classroom.google.com, select the “+” symbol in the upper right corner, click on “Join Class” and enter the class code provided to you.

The full course notes are available as a single PDF.


Class photo

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Day 1

Welcome

Ann Meyer

Resources

Module 1: Introduction to ChIP Sequencing and Analysis

Martin Hirst

Lecture

Recording

Introduction to Compute Canada

Using the Compute Canada HPC

Lab practical

Module 2: ChIP-Seq Alignment, Peak Calling, and Visualization

Misha Bilenky

Lecture

Recording

Lab practical

Lab practical Using MACS

Integrated Assignment

Assignment link

Day 2

Module 3: Introduction to WGBS and Analysis

Guillaume Bourque

Lecture

Lab practical

Module 4: Downstream Analyses and Integrative Tools

David Bujold

Lecture

Lab practical


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