Welcome to Analysis of Metagenomic Data.
The course schedule can be found here.
Pre-readings, pre-work, and laptop setup instructions can be found here.
We are using Google Classroom for discussion. Join the Class at https://classroom.google.com, select the “+” symbol in the upper right corner, click on “Join Class” and enter the class code provided to you.
The full course notes are available as a single PDF.
Module 1: Introduction to Metagenomics
Discussion: Sample Collection and Storage
Module 2: Marker Gene-Based Analysis
Introduction to Cloud Computing
We have set up 30 instances on the Amazon cloud - one for each student. In order to log in to your instance, you will need a security certificate. If you plan on using Linux or Mac OS X, please download this certificate. Otherwise if you plan on using Windows (with Putty and Winscp), please download this certificate.
Detail instructions can be found here.
Module 3: PICRUSt
Module 4: Metagenomic Taxanomic and Functional Composition
Module 5: Pulling Genomes from Metagenomes
Module 6: Metatranscriptomics
Module 7: Statistical Tests for Metagenomics
Module 8: Biomarkers and Bringing It All Together
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