Analysis of Metagenomic Data 2018
Welcome
Welcome to Analysis of Metagenomic Data.
The course schedule can be found here.
Pre-readings, pre-work, and laptop setup instructions can be found here.
We are using Google Classroom for discussion. Join the Class at https://classroom.google.com, select the “+” symbol in the upper right corner, click on “Join Class” and enter the class code provided to you.
The full course notes are available as a single PDF.
Class Photo
Day 1
Welcome
Ann Meyer
Module 1: Introduction to Metagenomics
Will Hsiao
Discussion: Sample Collection and Storage
Pauline Wang
Module 2: Marker Gene-Based Analysis
Will Hsiao
Introduction to Cloud Computing
Zhibin Lu
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We have set up 30 instances on the Amazon cloud - one for each student. In order to log in to your instance, you will need a security certificate. If you plan on using Linux or Mac OS X, please download this certificate. Otherwise if you plan on using Windows (with Putty and Winscp), please download this certificate.
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Detail instructions can be found here.
Module 3: PICRUSt
Morgan Langille
Day 2
Module 4: Metagenomic Taxanomic and Functional Composition
Gavin Douglas
Module 5: Pulling Genomes from Metagenomes
Laura Hug
Integrated Assignment
Day 3
Module 6: Metatranscriptomics
John Parkinson
Module 7: Statistical Tests for Metagenomics
Rob Beiko
Module 8: Biomarkers and Bringing It All Together
Fiona Brinkman
Thank you for attending the Analysis of Metagenomic Data workshop! Help us make this workshop better by filling out our survey.