The course schedule can be found here
Meet your faculty here
Pre-work including programs to install can be found here.
Connecting and properly using a cloud computing cluster at the CBW here
Module 1: Introduction to Single Cell RNA-seq
Module 2: Read Quantification
Module 3: Quality Control and Normalization
Module 4: Dimensionality Reduction & Visualization
Module 5: Biological Analyses
Module 6: Data Set Integration
If clicking this link does not start the download, please copy and paste the URL into a new tab or window. Please also note that some of these files are quite large. If you have issues downloading them, contact us at email@example.com. CourseData
We have made our AWS AMI (Amazon Machine Image) publicly available. To launch your own instance, follow the instructions provided by Amazon on how to launch an EC2 instance from a custom Amazon Machine Image. Please note that you will need an AWS account to proceed, and that you will need to upload the CourseData files yourself.
Here are the details of the AMI:
- AWS Region: us-east-1 (N. Virgina)
- AMI type: public image
- AMI name: CBW_scRNA_230719
- AMI ID: ami-08f9380781016295b
If you want to create and activate a new AWS account, please follow the instructions provided by Amazon.
For information on installing the necessary tools, please visit