Single Cell RNA-seq 2024
Welcome
The course schedule can be found here
Pre-Workshop Materials
Pre-work including programs to install can be found here.
AWS Module
Connecting and properly using a cloud computing cluster at the CBW here
Class Photo
Single Cell RNA-seq Analysis Class of 2024
Course Materials
Please note that all Rmd files are download links. HTML answer files will not render correctly unless you download the file and then open it in a web browser.
Day 1
Welcome
Nia Hughes
Module 1
Trevor Pugh
Module 1 Lecture Slides
Module 1 Lecture Recording
| Module 1 Lab Rmd - Empty | Answer Key | Answers (HTML) |
Module 2
Tallulah Andrews
Module 2 Lecture Recording
Module 2 Lecture Slides
| Module 2 Lab Rmd - Empty | Answer Key | Answers (HTML) |
Module 3
Tallulah Andrews
Module 3 Lecture Recording
Module 3 Lecture Slides
| Module 3 Lab Rmd - Empty | Answer Key | Answers (HTML) |
Module 4
Tallulah Andrews
Module 4 Lecture Recording
Module 4 Lecture Slides
| Module 4 Lab Rmd - Empty | Answer Key | Answers (HTML) |
Module 5
Tallulah Andrews
Module 5 Lecture Recording
Module 5 Lecture Slides
| Module 5 Lab Rmd - Empty | Answer Key | Answers (HTML) |
Module 6
Gary Bader
Module 6 Lecture Recording
Module 6 Lecture Slides
| Module 6 Lab Rmd - Empty | Answers (HTML) |
Post-Workshop Materials
CourseData
Note that some of these files are quite large. If you have issues downloading them, try copying the link address, opening a new blank tab, and entering the URL into the new tab’s address bar. If that fails, contact us at support@bioinformatics.ca.
AMI
We have made our AWS AMI (Amazon Machine Image) publicly available. To launch your own instance, follow the instructions provided by Amazon on how to launch an EC2 instance from a custom Amazon Machine Image. Please note that you will need an AWS account to proceed, and that you will need to upload the CourseData files yourself.
Here are the details of the AMI:
- AWS Region: us-east-1 (N. Virgina)
- AMI type: public image
- AMI name: CBW_scRNA_240619
- AMI ID: ami-030071a6d882d1373
If you want to create and activate a new AWS account, please follow the instructions provided by Amazon.