Epigenomic Analysis
I Introduction
Workshop Info
Pre-work
Schedule
Meet Your Faculty
Compute Setup
II Modules
Module 1: Introduction to ChIP Sequencing and Analysis
Lecture
Lab
Common Tools of the Trade
Module 1. BWA Alignment + BAM Post-processing
Module 2
Lecture
Lab
Module 2. Peak Calling
Module 3
Lecture
Lab
3. Visualization
Module 4
Lecture
Lab
1. Introduction
2. Mapping Tutorial
3. Differential Methylation Analysis in MethylKit
Module 5: Downstream Analyses & Integrative Tools
Lecture
Lab
Introduction
Lab Part 1
IHEC Data Portal
Predicting Motifs with HOMER
Looking for GO Terms Enrichment with GREAT
Going back to HOMER Results
Sponsors
Epigenomic Analysis 2021
Compute Setup
Compute setup
AWS Module
Connecting and properly using a cloud computing cluster at the CBW
here