Foundational Spatial 'Omics Analysis Workshop

I Introduction
Workshop Info
Meet Your Faculty
- TA’s
- Facilitators
Data and Compute Setup
II Modules
Module 1 Garbage In, Garbage Out
Module 2 Understanding your inputs and outputs
- Lecture
- Lab
Module 3 Scaling Across Resolutions
- Lecture
- Lab
Module 4 Drawing Boundaries: The Segmentation Problem
- Lecture
- Lab
Module 5 Normalizing Your Data
- Lecture
- Lab
Module 6 Building Your Spatial Data
- Lecture
- Lab
Module 7 Putting On Your Thinking Cap
- Student Project Presentation Topics
Module 8 Gene Enquiry and Visualization
- Lecture
- Lab
Module 9 Realizing the spatial potential in your datasets
- Lecture
- Lab

Sponsors

Foundational Spatial ’Omics Analysis Workshop 2026

Module 4 Drawing Boundaries: The Segmentation Problem

Lecture

Lab

Module 4a Lab Script

Module 4b Lab Script