Infectious Disease Genomic Epidemiology 2023
April 18, 2023 - April 21, 2023
Workshop Info
Welcome to the 2023 Infectious Disease Genomic Epidemiology Canadian Bioinformatics Workshop webpage!
Schedule
| April 18 | April 19 | April 20 | April 21 | ||||
|---|---|---|---|---|---|---|---|
| Time (EDT) | Module | Time (EDT) | Module | Time (EDT) | Module | Time (EDT) | Module |
| 09:45 | Virtual Arrivals | 09:45 | Virtual Arrivals, Day 1 Check-in | 09:45 | Virtual Arrivals, Day 2 Check-in | 09:45 | Virtual Arrivals, Day 3 Check-in |
| 10:00 | Virtual Welcome (Nia Hughes) | 10:00 | Module 4: Viral Pathogen Genomic Analysis - Single Nucleotide Variants (Jared Simpson) | 10:00 | Module 6: Antimicrobial Resistant Gene (AMR) Analysis (Andrew McArthur) | 10:00 | Module 8: Emerging Pathogen Detection and Identification (Aaron Petkau) |
| 10:30 | Module 1: Introduction to Genomic Epidemiology (William Hsiao) | 11:00 | Break (30 mins) | 11:00 | Break (30 mins) | 11:00 | Break (30 mins) |
| 11:30 | Break (30 mins) | 11:30 | Module 4 Lab (Jared Simpson) | 11:30 | Module 6 Lab (Andrew McArthur) | 11:30 | Module 8 Lab (Aaron Petkau) |
| 12:00 | Module 2: Phylogenetic Analysis (Fiona Brinkman) | 13:30 | Break (1 hr) | 13:30 | Break (1 hr) | 13:30 | Break (1 hr) |
| 13:00 | AWS setup (Zhibin Lu) | 14:30 | Module 5: Bacterial Pathogen Genomic Analysis (Ed Taboada) | 14:30 | Module 7: Phylodynamics and Transmission Dynamics (Finlay Maguire) | 14:30 | Keynote Lecture (Samira Mubareka) |
| 13:30 | Break (1 hr) | 15:30 | Break (30 mins) | 15:30 | Break (30 mins) | 15:30 | Break (30 mins) |
| 14:30 | Module 3: Data Curation and Data Sharing (Emma Griffiths) | 16:00 | Module 5 Lab (Ed Taboada) | 16:00 | Module 7 Lab (Finlay Maguire) | 16:00 | Module 9: Mobile Genetic Elements and Environmental Microbiome (Gary Van Domselaar) |
| 15:30 | Break (30 mins) | 18:00 | End of Day 2 | 18:00 | Class Photo | 17:00 | Module 9 Lab (Gary Van Domselaar) |
| 16:00 | Module 3 Lab (Emma Griffiths) | 18:00 | (Optional) Networking Virtual Social via Spatial Chat (until 19:00) | 18:15 | End of Day 3 | 18:00 | Survey & Closing Remarks |
| 18:00 | End of Day 1 | 18:30 | End of Workshop | ||||
| 18:00 | (Optional) Virtual Q&A on how to sustain skills beyond the workshop (until 18:30) |