Pathways and Network Analysis 2023
Welcome
Welcome to Pathways and Network Analysis 2023.
The course schedule can be found here
Meet your faculty here
Pre-workshop Tutorials
Required pre-workshop readings and setup can be found here
Class photo
Pathway and Network Analysis Class of 2023
Day 1
Welcome
Nia Hughes
Module 1: Introduction to Pathway and Network Analysis
Gary Bader
Module 1 Pre-work Lecture
Module 1 Lecture Recording
Module 1 Lecture Slides
Module 2: Finding over-represented pathways in gene lists
Veronique Voisin & Ruth Isserlin
Module 2 Lecture Recording
Module 2 Lecture Slides
Module 2 Lab Slides
Module 2 Lab: g:Profiler
Module 2 Lab: GSEA
Module 3: Network Visualization and Analysis with Cytoscape
Ruth Isserlin
Module 3 Lecture Recording
Module 3 Lecture Slides, Part 1
Module 3 Lecture Slides, Part 2
Module 3 Lab Slides
Module 3 Lab: g:Profiler
Module 3 Lab: GSEA
Module 3 Lab: (Bonus) Automation
Day 2
Module 4: More Depth on Pathway and Network Analysis
Lincoln Stein & Veronique Voisin
Module 4 Lecture Recording
Module 4 Lecture Slides
Module 4 Lab Slides
Module 4 Lab
Module 5: Gene Function Prediction
Veronique Voisin
Module 5 Pre-Work Lecture
Module 5 Lecture Recording
Module 5 Lecture Slides
Module 5 Lab: Cytoscape
Module 5 Lab: Web
Day 3
Module 6: Review of the tools in integrated workflow
Veronique Voisin
Module 6: Review of the Tools
Module 6 Lab: scRNA PMBC
Module 6 Lab: scRNA pathway analysis using g:Profiler
Module 6 Lab: scNetViz
Module 6 Integrated Assignment
Module 6 Integrated Assignment Bonus: Automation