Informatics for RNA-Seq Analysis 2020
Welcome
Welcome to Informatics for RNA-Seq Analysis 2020.
The course schedule can be found here.
Meet your faculty here
Pre-Workshop Preparation
Laptop Setup Instructions
Instructions to setup your laptop can be found here.
Pre-workshop Tutorials
Pre-readings and pre-work can be found here here.
It is in your best interest to complete these before the workshop.
Class Photo
Day 1
For all days please refer to content on rnabio.org.
Welcome
Rachade Hmamouchi
Module 0: Introduction to Compute Canada & Setup
Pierre-Oliver/Obi Griffith
Compute Canada Introduction
Connecting to the CC Cluster Lab Practical
Module 1: Introduction to RNA Sequencing Analysis
Malachi Griffith and Obi Griffith
Module 1 Lab
Module 2: RNA-seq Alignment and Visualization
Obi Griffith and Malachi Griffith
Alignment vs Assembly vs kmer mini lecture
Module 2 Lab
Team Assignment
Kelsy Cotto and Huiming Xia
Day 2
Module 3: Expression and Differential Expression
Obi Griffith and Malachi Griffith
Abundance Estimation mini lecture
Differential Expression mini lecture
Module 3 Lab
Module 4: Reference Free Alignment
Malachi Griffith
Alignment Free - Kallisto mini lecture
Module 4 Lab
Team Assignment
Kelsy Cotto and Huiming Xia
Day 3
Module 5: Single-cell RNA-seq
Allegra Petti
Module 5 Lab
Single-cell RNAseq using Seurat
additional resources
Survey
Could you please 2min of your time ? here ***