Bioinformatics for Cancer Genomics
Day 1 - 3
| Day 1 | Day 2 | Day 3 | |||
|---|---|---|---|---|---|
| 8:00 | Breakfast | 8:00 | Breakfast | 8:00 | Breakfast |
| 8:30 | Welcome and Introductions | 8:30 | Module 4: Genome Alignment (Simpson) | 8:30 | Module 7 : Somatic Mutations and Annotation (Morrissy) |
| 9:00 | Module 1: Introduction to Cancer Genomics (Pugh) | ||||
| 10:30 | Coffee Break | 10:00 | Coffee Break | 10:30 | Coffee Break |
| 11:00 | Module 2: Ethics of Data Usage and Security (Phillips) | 10:30 | Module 5: Genome Assembly (Simpson) | 11:00 | Module 7 Lab |
| 12:30 | Lunch | 12:30 | Lunch | 12:30 | Lunch |
| 1:30 | Module 3a: Cancer Databases (Ouellette) | 1:30 | Module 6: Copy Number Variants (Morrissy) | 1:30 | Module 8: Gene Expression (Yousif) |
| 2:30 | Module 3b: Visualization Tools (Meyer) | ||||
| 3:00 | Coffee Break | 3:00 | Coffee Break | 3:00 | Coffee Break |
| 3:30 | Module 3 lab | 3:30 | Module 6 Lab | 3:30 | Module 8 Lab |
| 4:00 | Logging into the Cloud (Lu) | ||||
| 4:45 | UNIX and R Review | ||||
| 5:30 | Dinner | 5:30 | Dinner | 5:00 | Dinner |
| 7:00 | Welcome Reception | 7:00 | Integrated Assignment | 7:00 | Integrated Assignment |
Day 4 - 6
| Day 4 | Day 5 | Day 6 | |||
|---|---|---|---|---|---|
| 8:00 | Breakfast | 8:00 | Breakfast | 8:00 | Breakfast |
| 8:30 | Module 9: Gene Fusion and Rearrangements (Haas) | 8:30 | Module 11: Working Reproducibly in the Cloud (O’Connor) | 8:30 | Guest Lecture (Hammell) |
| 10:30 | Coffee Break | 10:00 | Coffee Break | 10:00 | Coffee Break |
| 11:00 | Module 9 Lab | 10:30 | Module 12: Big Data Analytics in the Cloud (Yung) | 10:30 | Module 14: Variants to Networks (Stein and Haw) |
| 12:30 | Lunch | 12:30 | Lunch | 12:30 | Lunch |
| 1:30 | Module 10: Sharing and Scaling a VM (Mihaiescu) | 1:30 | Module 12 lab | 1:30 | Module 15: Clinical Data Integration (Erdman) |
| 3:00 | Coffee Break | 3:00 | Coffee Break | 3:00 | Coffee Break |
| 3:30 | Module 10 lab | 3:30 | Module 13: Genes to Pathways (Reimand) | 3:30 | Module 15 lab |
| 5:00 | Dinner | 5:00 | Dinner | 5:30 | |
| 7:00 | Integrated Assignment | 7:00 | Banquet |