Welcome to Bioinformatics for Cancer Genomics.
The course schedule can be found here.
Pre-readings, pre-work, and laptop setup instructions can be found here here.
If you have questions or comments, visit the workshop Q&A forum. You may need to join the group by clicking on the “+” symbol and entering the class code.
You can download the printed course manual here.
Module 1: Introduction to Cancer Genomics
Module 2: Ethics of Data Usage and Security
Module 3a: Cancer Databases
Module 3b: Visualization Tools
Logging into the Cloud
- We have set up 27 instances on the Amazon cloud - one for each student. In order to log in to your instance, you will need a security certificate. If you plan on using Linux or Mac OS X, please download this certificate. Otherwise if you plan on using Windows (with Putty), please download this certificate.
Unix and R review
Module 4: Genome Alignment
Module 5: Genome Assembly
Module 6: Copy Number Variants
Module 7: Somatic Mutations and Annotations
Module 8: Gene Expression
Module 9: Gene Fusion and Rearrangements
Module 10: Sharing and Scaling a VM
Module 11: Working Reproducibly in the Cloud
Module 12: Big Data Analytics in the Cloud
Module 13: Genes to Pathways
Module 14: Variants to Networks
Module 15: Clinical Data Integration
Thank you for attending the Bioinformatics for Cancer Genomics workshop! Help us make this workshop better by filling out our survey.