Informatics for High-throughput Sequencing Data Analysis 2020 Pre-Work

Pre-workshop Tutorials

It is in your best interest to complete these before the workshop.

1) R Preparation tutorials: You are expected to have completed the following tutorials in R beforehand. The tutorial should be very accessible even if you have never used R before.

• The CBW R tutorial
• Quick and Dirty Guide to R
• The R Tutorial up to and including 5. Basic Plots
• The R command cheat sheet

2) UNIX Preparation tutorials:

• UNIX Bootcamp
• Unix Cheat sheet

3) Sequencing Terminology

Pre-workshop Readings

Before coming to the workshop, read these:

• Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

• Genome structural variation discovery and genotyping

• A survey of sequence alignment algorithms for next-generation sequencing

• Genotype and SNP calling from next-generation sequencing data

Please note that these instructions may change prior to the workshop.