Pathways and Network Analysis of -Omics Data 2017

Welcome

Welcome to Pathways and Network Analysis of -Omics Data 2017.

The course schedule can be found here.

Pre-readings, pre-work, and laptop setup instructions can be found here

If you have questions or comments, visit the workshop Q&A forum.


Class Photo

Class Photo


Day 1

Welcome

Ann Meyer

Module 1: Introduction to Pathway and Network Analysis

Gary Bader

Lecture

Recording

Module 2 Finding Over-Represented Pathways

Gary Bader

Lecture

Recording

Veronique Voisin

Introduction to practical lab

Lab practical part 1 (g:Profiler)

Lab practical part 2 (GSEA)

Module 3: Network Visualization and Analysis with Cytoscape

Gary Bader

Lecture part 1

Lecture part 2

Recording

Veronique Voisin

Lab practical part 1

Lab practical part 2

Day 2

Module 4: More Depth on Network and Pathway Analysis

Lincoln Stein and Robin Haw

Lecture

Recording

Lab Lecture

Lab practical

Module 5: Gene Function Prediction

Quaid Morris

Lecture

Recording

Lab practical

Integrated Assignment

Assignment link

gProfiler file

Assignment answers link

Day 3

Module 6: Regulatory Network Analysis

Wyeth Wasserman

Lecture

Recording

Lab lecture

Lab practical

Final Thoughts

Veronique Voisin

Lecture


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