Welcome to Informatics for RNA-Seq Analysis 2017.
The course schedule can be found here.
Pre-readings, pre-work, and laptop setup instructions can be found here
If you have questions or comments, visit the workshop Q&A forum.
Day 1 and Day 2 refer to content in the RNA-Seq wiki.
Introduction to Cloud Computing
We have set up 30 instances on the Amazon cloud - one for each student. In order to log in to your instance, you will need a security certificate. If you plan on using Linux or Mac OS X, please download this certificate. Otherwise if you plan on using Windows (with Putty), please download this certificate.
Detail instructions can be found here.
Module 1: Introduction to RNA Sequencing Analysis
Module 2: RNA-seq Alignment and Visualization
Module 3: Expression and Differential Expression
Module 4: Reference Free Alignment
Module 5: Isoform Discovery and Alternative Expression
Keeping Up-to-date with RNA-Seq Analysis Developments
For additional resources, tutorials, future directions, and more please refer to the RNA-seq wiki
Module 6: Genome-Free De Novo Transcriptome Assembly
Module 7: Functional Annotation and Analysis of Transcripts
Thank you for attending the Informatics and RNA-Seq Analysis workshop! Help us make this workshop better by filling out our survey