Informatics for RNA-Seq Analysis
Welcome
Welcome to Informatics for RNA-Seq Analysis 2018.
The course schedule can be found here.
Pre-readings, pre-work, and laptop setup instructions can be found here.
We are using Google Classroom for discussion. Join the Class at https://classroom.google.com, select the “+” symbol in the upper right corner, click on “Join Class” and enter the class code provided to you.
The full course notes are available as a single PDF.
Class Photo
Day 1
Day 1 and Day 2 refer to content in the RNA-Seq wiki.
Welcome
Ann Meyer
Introduction to Cloud Computing
Obi Griffith
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We have set up 30 instances on the Amazon cloud - one for each student. In order to log in to your instance, you will need a security certificate. If you plan on using Linux or Mac OS X, please download this certificate. Otherwise if you plan on using Windows (with Putty and Winscp), please download this certificate.
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Detail instructions can be found here.
Module 1: Introduction to RNA Sequencing Analysis
Malachi Griffith
Lab Practical
Module 2: RNA-seq Alignment and Visualization
Fouad Yousif
Integrated Assignment
Hamza Farooq
Day 2
Module 2: RNA-seq Alignment and Visualization Lab Practical
Fouad Yousif
Module 3: Expression and Differential Expression
Obi Griffith
Module 3: Expression and Differential Expression Lab Practical
Module 4: Reference Free Alignment
Malachi Griffith
Integrated Assignment
Keeping Up-to-date with RNA-Seq Analysis Developments
For additional resources, tutorials, future directions, and more please refer to the RNA-seq wiki
Day 3
Module 5: Genome Guided and Genome-Free Transcriptome Assembly
Brian Haas
Module 6: Functional Annotation and Analysis of Transcripts
Brian Haas
Additional Optional Resources
Additional resources can be found on the RNA-Seq wiki.
Thank you for attending the Informatics for RNA-Seq Analysis workshop! Help us make this workshop better by filling out our survey