Welcome to Informatics for RNA-Seq Analysis 2018.
The course schedule can be found here.
Pre-readings, pre-work, and laptop setup instructions can be found here.
We are using Google Classroom for discussion. Join the Class at https://classroom.google.com, select the “+” symbol in the upper right corner, click on “Join Class” and enter the class code provided to you.
The full course notes are available as a single PDF.
Day 1 and Day 2 refer to content in the RNA-Seq wiki.
Introduction to Cloud Computing
We have set up 30 instances on the Amazon cloud - one for each student. In order to log in to your instance, you will need a security certificate. If you plan on using Linux or Mac OS X, please download this certificate. Otherwise if you plan on using Windows (with Putty and Winscp), please download this certificate.
Detail instructions can be found here.
Module 1: Introduction to RNA Sequencing Analysis
Module 2: RNA-seq Alignment and Visualization
Module 2: RNA-seq Alignment and Visualization Lab Practical
Module 3: Expression and Differential Expression
Module 3: Expression and Differential Expression Lab Practical
Module 4: Reference Free Alignment
Keeping Up-to-date with RNA-Seq Analysis Developments
For additional resources, tutorials, future directions, and more please refer to the RNA-seq wiki
Module 5: Genome Guided and Genome-Free Transcriptome Assembly
Module 6: Functional Annotation and Analysis of Transcripts
Additional Optional Resources
Additional resources can be found on the RNA-Seq wiki.
Thank you for attending the Informatics for RNA-Seq Analysis workshop! Help us make this workshop better by filling out our survey