Welcome to Bioinformatics for Cancer Genomics 2019.
The course schedule can be found here.
Meet your faculty here
Laptop Setup Instructions
Instructions to setup your laptop can be found here.
Pre-readings and pre-work can be found here here.
It is in your best interest to complete these before the workshop.
Module 1: Introduction to Cancer Genomics
Module 2: Ethics of Data Usage and Security
Module 3: Databases and Visualization Tools
Module 3 Lab: IGV
Logging into the Cloud
- We have set up instances on the Amazon cloud - one for each student. In order to log in to your instance, you will need a security certificate. If you plan on using Linux or Mac OS X, please download CBWCG.pem from Slack; Otherwise if you plan on using Windows (with Putty), please download CBWCG.ppk from Slack.
Unix and R review
Module 4: Genome Alignment
Module 5: Genome Assembly
Module 6: Copy Number Variants
Module 6 Lab
Module 7: Somatic Mutations and Annotations
Module 8: Gene Expression Profiling
Module 8 Lab
Module 9: Gene Fusion and Rearrangements
Module 10: Genes to Pathways
Module 11: Variants to Networks
Module 12: Integration of Clinical Data
Post workshop content for data sets, docker containers, AWS image, tools and install instructions can be found here
Thank you for attending the Bioinformatics for Cancer Genomics workshop! Help us make this workshop better by filling out our survey.