Introductory Spatial 'Omics Analysis:
Visium HD
I Welcome
Welcome
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Course Materials
Course Schedule
Pre-workshop Materials
Meet Your Faculty
Shamini Ayyadhury
Amina Abow
Jawairia Atif
Alyona Ivanova
Joan Kant
Dina Karamboulas
Savannah Kilpatrick
Melanie Peralta
Yiyan Wu
Trevor Pugh
Gary Bader
Nia Hughes (she/her)
Zhibin Lu
AWS setup instructions
Course data downloads
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II Modules
Opening Presentation: Introduction to Spatial Single Cell RNA-Seq Technologies
Lecture Recording
Lecture Slides
Module 0: Panorama of Spatial Biology
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Lecture Slides
Module 1a: Garbage In, Garbage Out
Lecture Recordings
Lecture Slides
Module 1b: Histology Preparation for Visium HD
Lecture Recordings
Lecture Slides
Module 2: Normalization and Transforming Your Data
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Lecture Slides
Scripts
Module 3: Building Your Spatial Model
Lecture Recording
Lecture Slides
Scripts
Module 4: Gene Enquiry and Visualization
Lecture Recording
Lecture Slides
Scripts
Module 5: Visualizing Gene Expression in Tissue Context
Lecture Recording
Lecture Slides
Scripts
Module 6: Computational Scaling and Conclusion
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Lecture Slides
Scripts
Concluding Remarks
Lecture Recording
Lecture Slides
Sponsors
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Introductory Spatial ’Omics Analysis: Visium HD
Concluding Remarks
Lecture Recording
Lecture Slides
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