Introductory Spatial 'Omics Analysis:
Visium HD

I Welcome
Welcome
- Class Photo
Course Materials
- Course Schedule
- Pre-workshop Materials
Meet Your Faculty
AWS setup instructions
- Course data downloads
- Amazon Machine Image
II Modules
Opening Presentation: Introduction to Spatial Single Cell RNA-Seq Technologies
- Lecture Recording
- Lecture Slides
Module 0: Panorama of Spatial Biology
- Lecture Recording
- Lecture Slides
Module 1a: Garbage In, Garbage Out
- Lecture Recordings
- Lecture Slides
Module 1b: Histology Preparation for Visium HD
- Lecture Recordings
- Lecture Slides
Module 2: Normalization and Transforming Your Data
Module 3: Building Your Spatial Model
Module 4: Gene Enquiry and Visualization
Module 5: Visualizing Gene Expression in Tissue Context
Module 6: Computational Scaling and Conclusion
Concluding Remarks
- Lecture Recording
- Lecture Slides

Sponsors

Published with bookdown

Introductory Spatial ’Omics Analysis: Visium HD

Module 3: Building Your Spatial Model

Lecture Recording

Lecture Slides

Download Module 3 slides: PDF | PPTX

Scripts

Module 3a Lab Script
Module 3b Lab Script: Blanks
Module 3b Lab Script: Filled