Informatics on High-Throughput Sequencing Data
Welcome
Welcome to Informatics on High-Throughput Sequencing Data.
The course schedule can be found here.
Pre-readings, pre-work, and laptop setup instructions can be found here.
If you have questions or comments, visit the workshop Q&A forum.
Class Photo
Day 1
Welcome
Ann Meyer
Module 1: Introduction to High-throughput Sequencing
Jared Simpson
Module 2: Data Visualization
Florence Cavalli
Module 3: Genome Alignment
Mathieu Bourgey
Lab Practical: Connecting to the Cloud
- We have set up 30 instances on the Amazon cloud - one for each student. In order to log in to your instance, you will need a security certificate. If you plan on using Linux or Mac OS X, please download this certificate. Otherwise if you plan on using Windows (with Putty and Winscp), please download this certificate.
Integrated Assignment
Day 2
Module 4: Small-Variant Calling and Annotation
Mathieu Bourgey
Module 5: Structural Variant Calling
Mathieu Bourgey
Module 6: De Novo Assembly
Jared Simpson
Survey
Thank you for attending the Informatics on High-throughut Sequencing Data workshop! Help us make this workshop better by filling out our survey.