Welcome to Informatics on High-Throughput Sequencing Data 2018.
The course schedule can be found here.
Pre-readings, pre-work, and laptop setup instructions can be found here.
We are using Google Classroom for discussion. Join the Class at https://classroom.google.com, select the “+” symbol in the upper right corner, click on “Join Class” and enter the class code provided to you.
The full course notes are available as a single PDF.
Module 1: Introduction to High-throughput Sequencing
Module 2: Data Visualization
Module 3: Genome Alignment
- We have set up 30 instances on the Amazon cloud - one for each student. In order to log in to your instance, you will need a security certificate. If you plan on using Linux or Mac OS X, please download this certificate. Otherwise if you plan on using Windows (with Putty and Winscp), please download this certificate.
Module 4: Small-Variant Calling and Annotation
Module 5: Structural Variant Calling
Module 6: De Novo Assembly
Thank you for attending the Informatics on High-Throughput Sequencing Data workshop! Help us make this workshop better by filling out our survey.