Bioinformatics for Cancer Genomics 2017
Welcome
Welcome to Bioinformatics for Cancer Genomics.
The course schedule can be found here.
Pre-readings, pre-work, and laptop setup instructions can be found here.
If you have questions or comments, visit the workshop Q&A forum.
Class Photo
Day 1
Welcome
Ann Meyer
Module 1: Introduction to Cancer Genomics
Trevor Pugh
Module 2: Databases and Visualization Tools
Francis Ouellette
Lab Practical: Connecting to the Cloud
- We have set up 30 instances on the Amazon cloud - one for each student. In order to log in to your instance, you will need a security certificate. If you plan on using Linux or Mac OS X, please download this certificate. Otherwise if you plan on using Windows (with Putty and Winscp), please download this certificate.
Unix and R review
Day 2
Module 3a: Genome Alignment
Jared Simpson
Module 3b: Genome Assembly
Jared Simpson
Module 4: Copy Number Variants
Sorana Morrissy
Day 3
Module 5: Somatic Mutations and Annotations
Sorana Morrissy
Module 6: Gene Expression
Fouad Yousif
Integrated Assignment
Day 4
Module 7: Gene Fusion and Rearrangements
Andrew McPherson
Rearrangements
Gene Fusions
Module 8: Variants to Networks
Juri Reimand
Day 5
Module 8: Variants to Networks
Lincoln Stein and Robin Haw
Guest Lecture
Steve Jones
Module 9: Clinical Data Integration
Anna Goldenberg
Data for lab part 1
Data for lab part 2
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