Cancer Analysis 2021
Welcome
The course schedule can be found here.
Meet your faculty here
Pre-Workshop Materials
Pre-workshop Tutorials
Pre-readings and pre-work can be found here.
It is in your best interest to complete these before the workshop.
Connecting and properly using a cloud computing cluster at the CBW Module
Class Photo
Comming soon
Day 1
Welcome
Rachade/Francis
Module 1: Introduction to Cancer Genomics (preWorkshop Video)
Trevor Pugh
Module 02: Data, formats and Databases
Richard de Borja
Module 03: Genome Alignment
Mathieu Bourgey
Lab practical raw & computed data
Data Sets CourseData from AWS
Day 2
Module 04: Somatic Genomic Alteration
Sorana Morrissy
Data Sets CourseData from AWS
Module 05: Single Cell Genomics - DNA
Andrew McPherson
Data Sets CourseData from AWS
Day 3
Module 06: Gene Expression Profiling
Florence Cavalli
Module 07: Single Cell Genomics - RNA
Trevor Pugh / Javier Diaz
- Lab
Data Sets CourseData from AWS
Day 4
Module 08: Genes to Pathways
Veronique Voisin
- Lab2:
- Lab2 part 1
- Lab2 part 2
## Module 09: Genes to Networks
Robin Haw
Day 5
Module 10: Integration of Clinical Data
Lauren Erdman
Module 11: Multi-omic data integration
Shraddha Pai
Data Sets CourseData from AWS
Module11 Note: Data from Module11 are in a file named Module10.tar