The course schedule can be found here
Meet your faculty here
Pre-work including programs to install can be found here
Module 1: Introduction to Genomic Epidemiology
Module 2: Phylogenetic Analysis
You can find the instructions here.
Module 3: Data Curation and Data Sharing
Module 4: Viral Pathogen Genomic Analysis - Single Nucleotide Variants
Module 5: Bacterial Pathogen Genomic Analysis
Module 6: Antimicrobial Resistant Gene (AMR) Analysis
Module 7: Phylodynamics and Transmission Dynamics
Module 8: Emerging Pathogen Detection and Identification
Keynote Lecture | Follow That Virus!: Genomics Leading the Way
Dr. Samira Mubareka
Module 9: Mobile Genetic Elements and Environmental Microbiome
Gary Van Domselaar
Note that some of these files are quite large. If you have issues downloading them, contact us at email@example.com.
We have made our AWS AMI (Amazon Machine Image) publicly available. To launch your own instance, follow the instructions provided by Amazon on how to launch an EC2 instance from a custom Amazon Machine Image. Please note that you will need an AWS account to proceed, and that you will need to upload the CourseData files yourself.
Here are the details of the AMI:
- AWS Region: us-east-1 (N. Virgina)
- AMI type: public image
- AMI name: CBW_230416
- AMI ID: ami-0b905fa1d1d233a17
If you want to create and activate a new AWS account, please follow the instructions provided by Amazon.
For information on installing the necessary tools, please visit