Data and Compute Setup

Course Data Downloads

• CCLE_chromatin.rda
• CCLE_metabolomics.rda
• CCLE_model_list.rda
• CCLE_rrpa.rda
• dummy_pset.rda
• GDSC_drivers.rda
• GDSC_drug_response.rda
• GDSC_gene_identifiers.rda
• GDSC_methylation_model_list.rda
• GDSC_methylation.rda
• GDSC_model_list.rda
• GDSC_rnaseq.rda
• NCI_ALMANAC_pset.rda
• NCI_ALMANAC_raw.rda
• NCI_ALMANAC_sample_metadata.rda
• NCI_ALMANAC_TRE.rda
• NCI_ALMANAC_treatment_metadata.rda
• NCI60_molecular_data.rda

Compute Setup

Installing from GitHub

Run to install this package and its dependencies.

pak::pkg_install("bhklab/CBWWorkshop2024", dependencies=TRUE)

## ! Using bundled GitHub PAT. Please add your own PAT using `gitcreds::gitcreds_set()`.

## ℹ Loading metadata database✔ Loading metadata database ... done
##  
## ℹ No downloads are needed
## ✔ 1 pkg + 204 deps: kept 186 [8.6s]

Note

You may need to install the pak package first. pak is a “Fresh Approach to R Package Installation”. You can install it by running:

install.packages("pak")