Infectious Disease Genomic Epidemiology
Welcome
Welcome to Infectious Disease Genomic Epidemiology.
The course schedule can be found here.
Pre-readings, pre-work, and laptop setup instructions can be found here.
Class Picture
Day 1
Welcome
Ann Meyer
Module 1: Introduction to Public Health Microbiology and Genomic Epidemiology
Will Hsiao
Lab Practical: Connecting to the Cloud
- We have set up 25 instances on the Amazon cloud - one for each student. In order to log in to your instance, you will need a security certificate. If you plan on using Linux or Mac OS X, please download this certificate. Otherwise if you plan on using Windows (with Putty and Winscp), please download this certificate.
Module 2: Pathogen Genomic Analysis I
Gary Van Domselaar
Module 3: Pathogen Genomic Analysis II
Ed Taboada
Keynote: Open Bioinformatics Takes a Centre Stage in Infectious Disease
Fiona Brinkman
Integrated Assignment
Day 2
Module 4: Antimicrobial Resistance Genes
Andrew McArthur
Module 5: Phylogeographic Analysis
Rob Beiko
Integrated Assignment
Day 3
Module 6: Emerging Pathogen Detection and Identification Using Metagenomics Samples
Gary Van Domselaar
Module 7: Data Visualization
Anamaria Crisan
Survey
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