Module 2

Module 2 covers three approaches to pathway and network analysis: differential expression (2a), defined gene lists (2b), and ranked gene lists (2c). Lecture slides and lab materials for each sub-module are linked below.

Lecture

• Module 2a — Differential Expression (Constance Li): PDF · PPTX
• Module 2b — Defined Gene Lists (Diogo Pellegrina): PPTX
• Module 2c — Ranked Gene Lists (Constance Li): PDF · PPTX

Lab

Lab slide decks:

• Module 2a Lab: PDF · PPTX
• Module 2b Lab: PPTX

Lab materials (zipped — contains scripts, data, and reference outputs):

• Lab 2a — Differential Expression: Download Lab2a.zip
• Lab 2b — Defined Gene Lists: Download Lab2b.zip
• Lab 2c — Ranked Gene Lists: Download Lab2c.zip